skbold.core.convert_to_mni module¶
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convert2mni
(file2transform, reg_dir, out_dir=None, interpolation='trilinear', suffix=None, overwrite=False, apply_warp=True)[source]¶ Transforms a nifti to mni152 (2mm) format. Assuming that reg_dir is a directory with transformation-files (warps) including example_func2standard warps, this function uses nipype’s fsl interface to flirt a nifti to mni format.
Parameters: - file2transform (str or list) – Absolute path to nifti file(s) that needs to be transformed
- reg_dir (str) – Absolute path to registration directory with warps
- out_dir (str) – Absolute path to desired out directory. Default is same directory as the to-be transformed file.
- interpolation (str) – Interpolation used by flirt. Default is ‘trilinear’.
- suffix (str) – What to append to name when converted (default : basename file2transform).
- overwrite (bool) – Whether to overwrite already existing transformed file(s)
- apply_warp (bool) – Whether to use the non-linear warp transform (if available).
Returns: out_all – Absolute path(s) to newly transformed file(s).
Return type: list