skbold
master
Getting started
Installation & dependencies
Data organization
Examples
Mvp-objects
MvpResults: model evaluation and feature visualization
Feature selection/extraction
An example workflow: MvpWithin
An example workflow: MvpBetween
API
skbold.core package
skbold.exp_model package
skbold.feature_extraction package
skbold.feature_selection package
skbold.pipelines package
skbold.postproc package
skbold.preproc package
skbold.utils package
skbold
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Index
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A
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B
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C
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E
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F
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G
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I
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L
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M
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P
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R
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S
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T
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U
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W
_
__init__() (ArrayPermuter method)
(ConfoundRegressor method)
,
[1]
(LabelBinarizer method)
,
[1]
(MajorityUndersampler method)
,
[1]
(PrevalenceInference method)
,
[1]
A
add_y() (MvpBetween method)
,
[1]
apply_binarization_params() (MvpBetween method)
,
[1]
ArrayPermuter (class in skbold.utils)
AverageRegionTransformer (class in skbold.feature_extraction)
(class in skbold.feature_extraction.transformers)
B
binarize_y() (MvpBetween method)
,
[1]
C
check_zeropadding_and_sort() (in module skbold.core.mvp_between)
cluster_size_threshold() (in module skbold.postproc)
(in module skbold.postproc.cluster_size_threshold)
ClusterThreshold (class in skbold.feature_extraction)
(class in skbold.feature_extraction.transformers)
compute_scores() (MvpResults method)
,
[1]
compute_statistics() (MvpAverageResults method)
,
[1]
ConfoundRegressor (class in skbold.preproc)
(class in skbold.preproc.confounds)
convert() (Eprime2tsv method)
,
[1]
convert2epi() (in module skbold.core)
(in module skbold.core.convert_to_epi)
convert2mni() (in module skbold.core)
(in module skbold.core.convert_to_mni)
crawl() (FsfCrawler method)
,
[1]
create() (MvpBetween method)
,
[1]
(MvpWithin method)
,
[1]
create_ftest_kbest_svm() (in module skbold.pipelines)
(in module skbold.pipelines.mvpa_pipelines)
create_ftest_percentile_svm() (in module skbold.pipelines)
(in module skbold.pipelines.mvpa_pipelines)
create_pca_svm() (in module skbold.pipelines)
(in module skbold.pipelines.mvpa_pipelines)
CrossvalSplitter (class in skbold.utils)
(class in skbold.utils.crossval_splitter)
E
Eprime2tsv (class in skbold.exp_model)
(class in skbold.exp_model.convert_eprime)
extract_roi_info() (in module skbold.postproc)
(in module skbold.postproc.extract_roi_info)
F
fisher_criterion_score() (in module skbold.feature_selection)
(in module skbold.feature_selection.selectors)
fit() (ArrayPermuter method)
(AverageRegionTransformer method)
,
[1]
(ClusterThreshold method)
,
[1]
(ConfoundRegressor method)
,
[1]
(IncrementalFeatureCombiner method)
(LabelBinarizer method)
,
[1]
(LabelFactorizer method)
,
[1]
(MajorityUndersampler method)
,
[1]
(PCAfilter method)
,
[1]
(PatternAverager method)
,
[1]
(SelectFeatureset method)
FsfCrawler (class in skbold.exp_model)
(class in skbold.exp_model.batch_fsf)
G
GenericUnivariateSelect (class in skbold.feature_selection)
(class in skbold.feature_selection.filters)
get_new_labels() (LabelFactorizer method)
,
[1]
I
IncrementalFeatureCombiner (class in skbold.feature_selection)
L
LabelBinarizer (class in skbold.preproc)
(class in skbold.preproc.label_preproc)
LabelFactorizer (class in skbold.preproc)
(class in skbold.preproc.label_preproc)
load_model() (MvpResults method)
,
[1]
load_nifti_and_check_space() (in module skbold.utils.load_roi_mask)
load_roi_mask() (in module skbold.utils.load_roi_mask)
M
MajorityUndersampler (class in skbold.preproc)
(class in skbold.preproc.label_preproc)
Mvp (class in skbold.core)
(class in skbold.core.mvp)
MvpAverageResults (class in skbold.postproc)
(class in skbold.postproc.mvp_results)
MvpBetween (class in skbold.core)
(class in skbold.core.mvp_between)
MvpResults (class in skbold.postproc)
(class in skbold.postproc.mvp_results)
MvpWithin (class in skbold.core)
(class in skbold.core.mvp_within)
P
parse() (PresentationLogfileCrawler method)
,
[1]
parse_presentation_logfile() (in module skbold.exp_model)
(in module skbold.exp_model.parse_presentation_logfile)
parse_roi_labels() (in module skbold.utils)
(in module skbold.utils.parse_roi_labels)
PatternAverager (class in skbold.feature_extraction)
(class in skbold.feature_extraction.transformers)
PCAfilter (class in skbold.feature_extraction)
(class in skbold.feature_extraction.transformers)
plot_results() (CrossvalSplitter method)
,
[1]
PresentationLogfileCrawler (class in skbold.exp_model)
(class in skbold.exp_model.parse_presentation_logfile)
PrevalenceInference (class in skbold.postproc)
(class in skbold.postproc.prevalence)
print_mask_options() (in module skbold.utils)
(in module skbold.utils.load_roi_mask)
R
RowIndexer (class in skbold.utils)
run() (PrevalenceInference method)
,
[1]
run_searchlight() (MvpBetween method)
,
[1]
S
save() (CrossvalSplitter method)
,
[1]
save_model() (MvpResults method)
,
[1]
SelectAboveCutoff (class in skbold.feature_selection)
(class in skbold.feature_selection.filters)
SelectFeatureset (class in skbold.utils)
skbold.core (module)
skbold.core.convert_to_epi (module)
skbold.core.convert_to_mni (module)
skbold.core.mvp (module)
skbold.core.mvp_between (module)
skbold.core.mvp_within (module)
skbold.exp_model (module)
skbold.exp_model.batch_fsf (module)
skbold.exp_model.convert_eprime (module)
skbold.exp_model.parse_presentation_logfile (module)
skbold.feature_extraction (module)
skbold.feature_extraction.transformers (module)
skbold.feature_selection (module)
skbold.feature_selection.filters (module)
skbold.feature_selection.selectors (module)
skbold.pipelines (module)
skbold.pipelines.mvpa_pipelines (module)
skbold.postproc (module)
skbold.postproc.cluster_size_threshold (module)
skbold.postproc.extract_roi_info (module)
skbold.postproc.mvp_results (module)
skbold.postproc.prevalence (module)
skbold.preproc (module)
skbold.preproc.confounds (module)
skbold.preproc.label_preproc (module)
skbold.utils (module)
skbold.utils.crossval_splitter (module)
skbold.utils.load_roi_mask (module)
skbold.utils.parse_roi_labels (module)
skbold.utils.roi_globals (module)
skbold.utils.sort_numbered_list (module)
sort_numbered_list() (in module skbold.utils)
(in module skbold.utils.sort_numbered_list)
split() (CrossvalSplitter method)
,
[1]
(MvpBetween method)
,
[1]
T
transform() (ArrayPermuter method)
(AverageRegionTransformer method)
,
[1]
(ClusterThreshold method)
,
[1]
(ConfoundRegressor method)
,
[1]
(IncrementalFeatureCombiner method)
(LabelBinarizer method)
,
[1]
(LabelFactorizer method)
,
[1]
(MajorityUndersampler method)
,
[1]
(PCAfilter method)
,
[1]
(PatternAverager method)
,
[1]
(RowIndexer method)
(SelectFeatureset method)
U
update() (MvpResults method)
,
[1]
update_mask() (Mvp method)
,
[1]
update_sample() (MvpBetween method)
,
[1]
W
write() (Mvp method)
,
[1]
(MvpAverageResults method)
,
[1]
(MvpResults method)
,
[1]
(PrevalenceInference method)
,
[1]
write_4D() (MvpBetween method)
,
[1]
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